| OM-RGCv1 | 10.1126/science.1261359 | PRJEB7988 | – | http://ocean-microbiome.embl.de/companion.html | https://doi.org/10.1594/PANGAEA.875582 | https://tara-oceans.mio.osupytheas.fr/ocean-gene-atlas/ | – | 40 154 822 | 243 |
| OM-RGCv2_metaG | 10.1016/j.cell.2019.10.014 | – | S-BSST297 | https://www.ocean-microbiome.org/ | https://doi.org/10.1594/PANGAEA.875582 | https://tara-oceans.mio.osupytheas.fr/ocean-gene-atlas/ | 370 | 46 775 154 | 180 |
| OM-RGCv2_metaT | 10.1016/j.cell.2019.10.014 | – | S-BSST297 | https://www.ocean-microbiome.org/ | https://doi.org/10.1594/PANGAEA.875582 | https://tara-oceans.mio.osupytheas.fr/ocean-gene-atlas/ | 187 | 46 775 154 | 187 |
| MATOU_metaG | 10.1038/s41467-017-02342-1 | PRJEB6609 | – | http://www.genoscope.cns.fr/tara/ | https://doi.org/10.1594/PANGAEA.875582 | https://tara-oceans.mio.osupytheas.fr/ocean-gene-atlas/ | – | 116 849 350 | 445 |
| MATOU_metaT | 10.1038/s41467-017-02342-1 | PRJEB6609 | – | http://www.genoscope.cns.fr/tara/ | https://doi.org/10.1594/PANGAEA.875582 | https://tara-oceans.mio.osupytheas.fr/ocean-gene-atlas/ | – | 116 849 350 | 440 |
| MGT | 10.1101/gr.253070.119 | PRJEB4352, PRJEB6609, ERZ480625 | – | http://www.genoscope.cns.fr/tara/ | https://doi.org/10.1594/PANGAEA.875582 | https://tara-oceans.mio.osupytheas.fr/ocean-gene-atlas/ | 924 | 6 946 068 | 364 |
| SMAGs (TO eukaryotic genomes) | 10.1101/2020.10.15.341214 | PRJEB402 | – | http://www.genoscope.cns.fr/tara/ | https://doi.org/10.1594/PANGAEA.875582 | https://tara-oceans.mio.osupytheas.fr/ocean-gene-atlas/ | 713 | 10 207 435 | 939 |
| BAC_ARC_MAGs | 10.1038/s41396-021-01135-1 | – | – | http://www.genoscope.cns.fr/tara/ https://figshare.com/articles/dataset/Marine_diazotrophs/14248283 | https://doi.org/10.1594/PANGAEA.875582 | https://tara-oceans.mio.osupytheas.fr/ocean-gene-atlas/ | 1 888 | 4 567 982 | 922 |
| Arctic_MAGs_metaG | 10.1038/s41564-021-00979-9 | PRJEB41575 | S-BSST451 | – | https://doi.org/10.1594/PANGAEA.875582 | https://tara-oceans.mio.osupytheas.fr/ocean-gene-atlas/ | 530 | 1 033 381 | 68 |
| Arctic_MAGs_metaT | 10.1038/s41564-021-00979-9 | PRJEB41575 | S-BSST451 | – | https://doi.org/10.1594/PANGAEA.875582 | https://tara-oceans.mio.osupytheas.fr/ocean-gene-atlas/ | 530 | 1 033 381 | 53 |
| MDeep-MAGs | 10.1038/s42003-021-02112-2 | PRJEB40454, PRJEB44456 | S-BSST457 | https://malaspina-public.gitlab.io/malaspina-deep-ocean-microbiome/ | https://static-content.springer.com/esm/art%3A10.1038%2Fs42003-021-02112-2/MediaObjects/42003_2021_2112_MOESM4_ESM.xlsx | https://tara-oceans.mio.osupytheas.fr/ocean-gene-atlas/ | 317 | 867 795 | 58 |
| MATOU1.5 | 10.1038/s41467-025-58027-7 | PRJEB402, PRJEB9691, PRJEB9738 and PRJEB9739 | | https://www.genoscope.cns.fr/tara/#MATOU-1.5 | https://doi.org/10.1594/PANGAEA.875582 | | | | |
| Ocean microbiomics | 10.1038/s41586-022-04862 | PRJEB45951 | | “https://doi.org/10.6084/m9.figshare.4902923; https://github.com/SushiLab/magpipe/; and archived at Zenodo (https://doi.org/10.5281/zenodo.6393817
“ | | https://microbiomics.io/ocean/ | 26 000 | | |
| TOSAG39-1 | 10.1038/srep37900 | PRJEB402 | ERA768231 | | https://doi-org.insb.bib.cnrs.fr/10.1594/PANGAEA.840721 | | | | |
| TOP pyrosequences | 10.1038/ismej.2013.59 | | ERA155562 to ERA155563 | http://www.igs.cnrs-mrs.fr/TaraOceans | | | | | |
| Tara Oceans Ocean Microbiome project | 10.3390/v10090496 | PRJEB7988 | ERP009009 | https://ddbj.nig.ac.jp/public/ddbj_database/dra/fastq/DRA006/DRA006230/ | | | | | |
| Metagenomics of viral metagenome | 10.1128/AEM.00123-14 | PRJEB4356 | ERP003633 | | | | | | |
| Pacific Ocean Virome (POV) | 10.1371/journal.pone.0057355 | | | http://mirrors.iplantcollaborative.org/browse/iplant/home/shared/imicrobe/pov | | | | | |
| Tara Ocean Viromes (TOV) | 10.1126/science.1261498 | | | https://datacommons.cyverse.org/browse/iplant/home/shared/iVirus/TOV_43_viromes | | | | | |
| Global Ocean Viruses (GOV) | https://rdcu.be/eod54 | | | https://datacommons.cyverse.org/browse/iplant/home/shared/iVirus/GOV | | | | | |
| GOV 2 | 10.1016/j.cell.2019.03.040 | | | https://datacommons.cyverse.org/browse/iplant/home/shared/iVirus/GOV2.0 | | | | | |
| AMG datasets | 10.1186/s40168-024-01876-z | | | https://zenodo.org/records/12668289 | | | | | |
| Global Ocean RNA viruses | 10.1126/science.abn6358
;
10.1126/science.abm5847 | | | https://datacommons.cyverse.org/browse/iplant/home/shared/iVirus/ZayedWainainaDominguez-Huerta_RNAevolution_Dec2021 | | | | | |
